From: Gene expression markers of Tumor Infiltrating Leukocytes
Cell type | Correlation with IHC | Root Mean Squared Error from IHC | Correlation with flow | Root Mean Squared Error from Flow | Mean pairwise similarity statistic in TCGA | SD due to technical noise (log2 scale) | Proportion of variance due to noise |
---|---|---|---|---|---|---|---|
B-cells | Â | Â | 0.62 | 0.064 | 0.59 | 0.13 | 0.0022 |
CD45 | Â | Â | Â | Â | cNA | 0.1249 | 0.0024 |
Cytotoxic cells | Â | Â | Â | Â | 0.69 | 0.0813 | 0.001 |
DC | Â | Â | Â | Â | 0.46 | 0.2307 | 0.0151 |
Exhausted CD8 | Â | Â | Â | Â | 0.44 | 0.1624 | 0.0062 |
Macrophages | Â | Â | Â | Â | 0.71 | 0.0828 | 0.0013 |
Mast cells | Â | Â | Â | Â | 0.74 | 0.1949 | 0.0086 |
Neutrophils | Â | Â | Â | Â | 0.48 | 0.19 | 0.0026 |
NK CD56dim cells | Â | Â | 0.47 | 0.071 | 0.40 | 0.2347 | 0.1073 |
NK cells | Â | Â | 0.51 | 0.118 | 0.47 | 0.1938 | 0.017 |
T-cells | 0.66 | 1.3 | a0.78 | a0.064 | 0.81 | 0.1116 | 0.0021 |
Th1 cells | Â | Â | Â | Â | cNA | 0.2212 | 0.0304 |
Treg | Â | Â | Â | Â | cNA | 0.371 | 0.049 |
CD8 T cells | 0.53 | 1.5 | 0.78 | 0.138 | 0.51 | 0.1842 | 0.0045 |
CD4 cells | Â | Â | b0.65 | b0.752 | Â | Â | Â |