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Table 3 CyTOF panel for the phenotypic and functional analysis of immune cell subsets

From: Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients

 

Metal label

Specificity

Antibody clone

1

115In

Dead cells

n/a

2

140Ce

Beads

n/a

3

141Pr

CD25

M-A251

4

142Nd

CD19

HIB19

5

143Nd

IL-10

JES3-9D7

6

144Nd

IL-4

MP4-25D2

7

145Nd

CD4

RPA-T4

8

146Nd

CD8

RPA-T8

9

147Sm

CD20

2H7

10

148Nd

CD57

HCD57

11

149Sm

CTLA-4

14D3

12

150Nd

MIP-1β

D21–1351

13

151Eu

CD107a

H4A3

14

152Sm

TNFa

Mab11

15

153Eu

CD45RA

HI100

16

154Sm

CD3

UCHT1

17

155Gd

CD28

L293

18

156Gd

CD38

HB-7

19

157Gd

HLA-DR

G46–6

20

158Gd

CD33

WM53

21

159 Tb

GMCSF

BVD2-21C11

22

160Gd

CD14

M5E2

23

161Dy

IFNγ

4S.B3

24

162Dy

CD69

FN50

25

163Dy

TCRγδ

B1

26

164Dy

IL-17

N49–853

27

165Ho

CD127

A019D5

28

166Er

IL-2

MQ1-17 h12

29

167Er

CD27

L128

30

168Er

CD154 (CD40L)

24–31

31

169Tm

CCR7

150503

32

170Er

PD1

EH12.1

33

171Yb

Granzyme B

GB11

34

172Yb

PD-L2

24F.10C12

35

173Yb

Perforin

B-D48

36

174Yb

CD16

3G8

37

175Lu

PD-L1

29E.2A3

38

176Yb

CD56

NCAM16.2

39

191Ir

DNA1

n/a

40

193Ir

DNA2

n/a

  1. A 40-marker CyTOF panel for the phenotypic and functional analysis of immune cell subsets in melanoma patients treated with anti-CTLA-4 or anti-PD-1 therapy is shown. The element and isotope of the metal tag conjugated to each antibody and non-protein subject (italic) is indicated under the ‘Metal Label’ column. ‘Specificity’ indicates the target recognized by the metal-conjugated antibody or non-protein subject. 193Ir/195Ir DNA Intercalator and 115In Maleimide DOTA live/dead stain facilitate the identification of live intact singlets while calibration beads (140Ce) are important for data pre-processing. Antibody clones are listed when applicable