Skip to main content

Table 1 MSIplus and MSI-PCR Microsatellite Loci

From: Microsatellite instability in prostate cancer by PCR or next-generation sequencing

Target Loci

Panel(s)

Loci Coordinates (GRCh37/hg19)

Repeat Type

Gene

Bat25

MSI-PCR, MSIplus

chr4:55598212–55598236

(T)25

KIT, intronic

Bat-26

MSI-PCR, MSIplus

chr2:47641560–47641586

(A)27

MSH2, intronic

MONO-27

MSI-PCR, MSIplus

chr2:39564894–39564921

(T)28

MAP4K3, intronic

NR-21

MSI-PCR, MSIplus

chr14:23652347–23652367

(A)21

SLC7A8, exonic

NR-24

MSI-PCR, MSIplus

chr2:95849362–95849384

(T)23

ZNF2, exonic

MSI-01

MSIplus

chr1:201754411–201754427

(T)17

NAV1, intronic

MSI-03

MSIplus

chr2:62063094–62063110

(A)17

FAM161A, intronic

MSI-04

MSIplus

chr2:108479623–108479640

(T)18

RGPD4, intronic

MSI-06

MSIplus

chr5:172421761–172421775

(T)15

ATP6V0E1, intronic

MSI-07

MSIplus

chr6:142691951–142691967

(T)17

GPR126, intronic

MSI-08

MSIplus

chr7:1787520–1787536

(A)17

ELFN1, exonic

MSI-09

MSIplus

chr7:74608741–74608753

(T)13

GTF2IP1, intronic

MSI-11

MSIplus

chr11:106695515–106695526

(T)12

GUCY1A2, intronic

MSI-12

MSIplus

chr15:45897772–45897785

(T)14

BLOC1S6, intronic

MSI-13

MSIplus

chr16:18882660–18882674

(A)15

SMG1, intronic

MSI-14

MSIplus

chr17:19314918–19314935

(T)18

RNF112, intronic

HSPH1-T17

MSIplus

chr13:31722621–31722637

(A)17

HSPH1, intronic

EWSR1

MSIplus

chr22:29696469–29696484

(T)16

EWSR1, exonic

  1. For coordinates of the loci captured by Large-Panel NGS see Additional file 2: Table S1