Table 1 Top up- or downregulated genes in high-density vs. low-density collagen
From: Collagen density regulates the activity of tumor-infiltrating T cells
Gene name | Fold change | FDR |
|---|---|---|
Upregulated genes | ||
PMEPA1 | 4.07834 | 1.41531E-61 |
COL6A3 | 3.68014 | 3.12178E-51 |
CD101 | 3.95483 | 1.25389E-41 |
SPON1 | 2.62745 | 8.14423E-38 |
BMF | 1.79401 | 2.27592E-33 |
LDLRAD4 | 1.84521 | 4.21774E-25 |
KLF7 | 2.22110 | 6.98652E-25 |
DIXDC1 | 3.00926 | 5.88243E-24 |
SRGAP3 | 3.09677 | 1.52178E-23 |
IL2RB | 1.55381 | 4.34924E-23 |
Downregulated genes | ||
ESPL1 | −2.23355 | 2.11961E-28 |
TOP2A | −1.77958 | 1.68833E-20 |
KIF11 | −1.85991 | 2.13272E-18 |
CSF2 | −5.01719 | 5.95403E-18 |
KNL1 | −2.36757 | 3.00598E-17 |
CENPE | −2.49309 | 3.37425E-17 |
IL2RA | −1.72578 | 7.80826E-17 |
CIP2A | −2.08149 | 2.08037E-15 |
IL12RB2 | −1.68486 | 2.31599E-15 |
NCAPG | −1.97323 | 3.16306E-15 |