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Table 1 Top up- or downregulated genes in high-density vs. low-density collagen

From: Collagen density regulates the activity of tumor-infiltrating T cells

Gene name Fold change FDR
Upregulated genes
PMEPA1 4.07834 1.41531E-61
COL6A3 3.68014 3.12178E-51
CD101 3.95483 1.25389E-41
SPON1 2.62745 8.14423E-38
BMF 1.79401 2.27592E-33
LDLRAD4 1.84521 4.21774E-25
KLF7 2.22110 6.98652E-25
DIXDC1 3.00926 5.88243E-24
SRGAP3 3.09677 1.52178E-23
IL2RB 1.55381 4.34924E-23
Downregulated genes
ESPL1 −2.23355 2.11961E-28
TOP2A −1.77958 1.68833E-20
KIF11 −1.85991 2.13272E-18
CSF2 −5.01719 5.95403E-18
KNL1 −2.36757 3.00598E-17
CENPE −2.49309 3.37425E-17
IL2RA −1.72578 7.80826E-17
CIP2A −2.08149 2.08037E-15
IL12RB2 −1.68486 2.31599E-15
NCAPG −1.97323 3.16306E-15