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Table 2 First column is the score name, second column is the description of the score

From: Level of neo-epitope predecessor and mutation type determine T cell activation of MHC binding peptides

Feature name

Description

Notes

Expression level

The average expression level by cell line in melanoma tissue

http://www.ebi.ac.uk/

Size difference

The absolute difference in size between the W.T. amino acid and the mutant

By Dalton units

Hydrophobicity

The absolute difference in hydrophobicity index between the W.T. amino acid and the mutant

Kyte J, Doolittle RF

Charge difference

The absolute difference in charge between the W.T. amino acid and the mutant

Values at ph = 7.4

Polar change

Categorical variable for the polarity change between the W.T. amino acid the mutant

Values at ph = 7.4

Cleavage score

Estimated cleavage probability of a full peptide.

Vider et al.

Tap score

Estimated TAP binding energy

Peters et al.

  1. Third column is a description of the score and the reference for the score