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Table 2 MS-detected neoantigens

From: Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment

PDOSource genePeptid length (amino acids)MutationWT PeptideNeoantigenWT detectedLowest NetMHC rank (%) WTLowest NetMHC rank (%) neoantigen
CRC-01U2SURP11T224RIQEERDERHKTIQEERDERHKRno75.84955.7765
CRC-01MED258K422 TSVDANTKLSVDANTTLno0.53360.1586
CRC-04FMO510S423 NRYVESQRHTIRYVENQRHTIno0.319110.2692